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Rustic plate of pumpkin muffins sprinkled with cinnamon sugar.

Pumpkin Cream Cheese Muffins with Swirl Filling

Moist pumpkin muffins filled with sweet cream cheese, topped with cinnamon streusel, and baked into a cozy fall treat.
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Course: Breakfast, Dessert, Snack
Cuisine: American
Keyword: Pumpkin Cream Cheese Muffins with Swirl Filling
Prep Time: 20 minutes
Cook Time: 25 minutes
Servings: 14

Ingredients

Cream Cheese Filling

  • 8 oz cream cheese softened
  • ¼ c light brown sugar
  • 1 large egg yolk
  • 1 tsp vanilla extract

Streusel Topping

  • ½ c all-purpose flour
  • ¼ c light brown sugar
  • ¼ c cold unsalted butter cubed
  • 1 tsp ground cinnamon
  • tsp ground nutmeg

Pumpkin Muffins

  • 2 c all-purpose flour 250g
  • 2 tsp pumpkin pie spice
  • 1 tsp ground cinnamon
  • ½ tsp ground nutmeg
  • 1 ½ tsp baking powder
  • 1 tsp baking soda
  • ½ tsp salt
  • 2 large eggs
  • ½ c light brown sugar
  • ½ c granulated sugar
  • 1 c pumpkin puree
  • ½ c vegetable oil
  • ½ c sour cream
  • 1 tsp vanilla extract

Instructions

Step 1: Prepare the Cream Cheese Filling

  • In a mixing bowl, beat the softened cream cheese and light brown sugar until smooth and fully combined.
  • Add the egg yolk and vanilla extract.
  • Mix until the filling is creamy and uniform in texture.
  • Cover the bowl and refrigerate while preparing the remaining components.

Step 2: Prepare the Streusel Topping

  • In a separate bowl, combine the all-purpose flour, light brown sugar, cold cubed butter, ground cinnamon, and ground nutmeg.
  • Using a pastry cutter or your fingertips, work the butter into the dry ingredients until coarse crumbs form.
  • Cover the bowl and refrigerate until ready to use.

Step 3: Prepare the Oven and Muffin Pan

  • Preheat the oven to 425°F.
  • Line 14 muffin cups with paper liners.

Step 4: Combine the Dry Ingredients

  • In a large mixing bowl, whisk together the all-purpose flour, pumpkin pie spice, cinnamon, nutmeg, baking powder, baking soda, and salt.
  • Set aside.

Step 5: Combine the Wet Ingredients

  • In a separate bowl, whisk the eggs, light brown sugar, and granulated sugar until well blended.
  • Add the pumpkin puree, vegetable oil, sour cream, and vanilla extract.
  • Mix until smooth and fully combined.

Step 6: Prepare the Muffin Batter

  • Create a well in the center of the dry ingredients.
  • Pour the wet ingredients into the dry ingredients.
  • Stir gently by hand until just combined. Do not overmix.

Step 7: Fill the Muffin Cups

  • Fill each prepared muffin cup approximately ⅓ full with pumpkin batter.
  • Spoon about 1 tbsp of cream cheese filling into the center of each muffin cup.
  • Top with the remaining pumpkin batter until the muffin cups are full.

Step 8: Add the Streusel Topping

  • Sprinkle the chilled streusel topping evenly over each muffin.
  • Press the topping gently so it adheres to the batter.

Step 9: Bake

  • Bake the muffins at 425°F for 5 minutes.
  • Without removing the muffins from the oven, reduce the temperature to 350°F.
  • Continue baking for 15 to 18 minutes, or until the muffin tops are set and a toothpick inserted into the pumpkin muffin portion comes out clean or with a few moist crumbs.

Step 10: Cool

  • Allow the muffins to cool in the pan for 10 minutes.
  • Transfer the muffins to a wire rack and allow them to cool completely before serving or storing.

Notes

To make these Pumpkin Cream Cheese Muffins with Swirl Filling gluten-free, replace the all-purpose flour in both the muffin batter and streusel topping with a certified gluten-free 1:1 baking flour blend. Use certified gluten-free pumpkin pie spice, baking powder, baking soda, vanilla extract, and all other packaged ingredients. Confirm that the cream cheese, sour cream, and pumpkin puree are gluten-free and free from cross-contamination. For best results, use clean utensils, bowls, and muffin pans that have not come into contact with gluten-containing ingredients.